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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2707571_2710972_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2707571 - 2710972
Intron Length:
3402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TGTTTTTAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTGTTTTTAATC
Flanking Amino Acid:
IEHVEAFCFGDQDSAKDVEE
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.1
0.63
1
78.8
38.7
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
69.1
0.58
1.2
70.01
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006258
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021862
2674362 - 2731011
56650
ENSAPLT00000042619
2642488 - 2731011
88524
ENSAPLT00000006566
2672926 - 2731011
58086
ENSAPLT00000037782
2658927 - 2731011
72085
ENSAPLT00000032395
2642488 - 2731011
88524
ENSAPLT00000044947
2677344 - 2731011
53668
ENSAPLT00000029203
2669505 - 2731011
61507
ENSAPLT00000044719
2669505 - 2731011
61507