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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2719613_2730962_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2719613 - 2730962
Intron Length:
11350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGGGCC
5'SS Class:
major
3'SS Sequence:
TGTGTCGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AGATCTAAAAAT
Flanking Amino Acid:
AEFDVVVVGTGLPESIIAAA
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
60.6
40.1
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
77.2
0.61
1
73.4
41.9
Minor 5ss
29.9
-2.3
3.7
42.2
44.8
Minor BPS
45.4
-0.2
1.9
62.48
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006258
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021862
2674362 - 2731011
56650
ENSAPLT00000042619
2642488 - 2731011
88524
ENSAPLT00000006566
2672926 - 2731011
58086
ENSAPLT00000037782
2658927 - 2731011
72085
ENSAPLT00000032395
2642488 - 2731011
88524
ENSAPLT00000044947
2677344 - 2731011
53668
ENSAPLT00000029203
2669505 - 2731011
61507
ENSAPLT00000044719
2669505 - 2731011
61507