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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2752390_2900565_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2752390 - 2900565
Intron Length:
148176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTATCT
Flanking Amino Acid:
ETLYNDCTNASSRPGRPPKR
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.3
35.8
Major BPS
100
1.24
0.5
100
0
Major PPT
81.7
0.71
0.9
81.5
34.7
Minor 5ss
32.2
-2
3.3
41.8
45.1
Minor BPS
60.8
0.42
1.8
82.49
38.6

Associated Gene:

Gene:
DACH2
Ensembl Gene ID:
ENSAPLG00000006115
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006350
2751818 - 3038825
287008
ENSAPLT00000031774
2751818 - 3038825
287008