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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2900682_2945358_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2900682 - 2945358
Intron Length:
44677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
LLSPGLISPTGLTAAAMAEA
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
DACH2
Ensembl Gene ID:
ENSAPLG00000006115
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006350
2751818 - 3038825
287008