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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2915872_2945358_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2915872 - 2945358
Intron Length:
29487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTTTACT
5'SS Class:
major
3'SS Sequence:
TTTATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
FAKLKTLQIQGLTAAAMAEA
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
75.1
34.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
39.1
-1.2
2.7
52.4
44.2
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
DACH2
Ensembl Gene ID:
ENSAPLG00000006115
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031774
2751818 - 3038825
287008