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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_304615_305768_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
304615 - 305768
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTGCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTCTGTTTTATT
Flanking Amino Acid:
LMETPPGMENIANLADSTED
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
77.2
31.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.1
0.68
0.9
77.3
36.7
Minor 5ss
36.4
-1.5
3.6
51.8
45.1
Minor BPS
52.2
0.15
2.1
75.01
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024594
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033344
301834 - 312063
10230