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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_305835_306215_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
305835 - 306215
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
CTCTCCTACATA
Flanking Amino Acid:
YNFGSEAFSDTFNPELPALD
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.7
36.5
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
90
0.9
0.7
88.2
29.1
Minor 5ss
30
-2.3
3.2
39
39.8
Minor BPS
48.9
-0
2.1
62.11
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024594
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033344
301834 - 312063
10230