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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_308859_309141_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
308859 - 309141
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
CTATATATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTGCTATATAT
Flanking Amino Acid:
VRIPVESGQAMAFSEHNSDD
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
76.6
0.6
0.9
70.2
39.5
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
48.1
-0
2
73.89
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024594
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033344
301834 - 312063
10230