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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_309672_310377_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
309672 - 310377
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCATTG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
TTTTTCTTTTTA
Flanking Amino Acid:
HSQQQKLLSKILQFILSLMR
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
63.6
43.6
Major BPS
70.5
0.51
1
72
33.1
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
46
-0.4
3.1
64.9
46.4
Minor BPS
45
-0.3
3.6
74.21
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024594
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033344
301834 - 312063
10230