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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3208016_3228278_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3208016 - 3228278
Intron Length:
20263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAC
U12 Branch Point Sequence:
CAGCCATTACAC
Flanking Amino Acid:
TEENSDESAERLSTTSNSLL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
64
0.35
1
72.7
31.8
Major PPT
86.7
0.83
0.7
81
24.1
Minor 5ss
36.5
-1.5
3.6
56
48.1
Minor BPS
43
-0.5
1.9
47.56
41.3

Associated Gene:

Gene:
KLHL4
Ensembl Gene ID:
ENSAPLG00000005695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005915
3207594 - 3246663
39070