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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3228453_3228902_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3228453 - 3228902
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACATT
5'SS Class:
major
3'SS Sequence:
GTTCTATTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TCCTCCTAAAAT
Flanking Amino Acid:
IVGDQKIPAHRLVLSAVSDY
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
75.3
40.7
Major BPS
75.5
0.63
1
66
40.9
Major PPT
71
0.47
1.1
68.3
41.6
Minor 5ss
43.6
-0.7
3.3
66.1
45
Minor BPS
62.1
0.46
1.8
76.73
45.7

Associated Gene:

Gene:
KLHL4
Ensembl Gene ID:
ENSAPLG00000005695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005915
3207594 - 3246663
39070