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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3232281_3235352_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3232281 - 3235352
Intron Length:
3072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
CTGTACTGAAGC
Flanking Amino Acid:
LLKVAHTYTMEHFTEVIKNQ
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.7
29.2
Major BPS
71.6
0.54
1
72
33.1
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
37.4
-1.4
3
44.1
44.7
Minor BPS
48.4
-0.1
2
59.99
44.9

Associated Gene:

Gene:
KLHL4
Ensembl Gene ID:
ENSAPLG00000005695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005915
3207594 - 3246663
39070