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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_323371_324724_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
323371 - 324724
Intron Length:
1354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTCTCCCAAATA
Flanking Amino Acid:
MYWASGLAYPPKYSLLA
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.9
31.6
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
66.7
0.38
0.9
63.3
31.9
Minor 5ss
32.2
-2
3.5
44.1
44.7
Minor BPS
55.5
0.17
2
71.63
41

Associated Gene:

Gene:
HEPH
Ensembl Gene ID:
ENSAPLG00000005347
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005585
323350 - 345391
22042