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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3235566_3236614_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3235566 - 3236614
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATATACATAAGA
Flanking Amino Acid:
YIRLPLLPPQLLADLENSPM
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.8
0.63
0.8
76.7
31.6
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
48.8
-0
2
65.07
40.6

Associated Gene:

Gene:
KLHL4
Ensembl Gene ID:
ENSAPLG00000005695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005915
3207594 - 3246663
39070