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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3236802_3239903_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3236802 - 3239903
Intron Length:
3102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
CTGTCTTCAACA
Flanking Amino Acid:
YAVGGMDATKGTTTIEKYDL
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
73.8
0.54
0.9
69.6
35.5
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
64.9
0.46
1.6
71.13
41.5

Associated Gene:

Gene:
KLHL4
Ensembl Gene ID:
ENSAPLG00000005695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005915
3207594 - 3246663
39070