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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3240129_3242012_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3240129 - 3242012
Intron Length:
1884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTATCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CAATTCCTAATT
Flanking Amino Acid:
PPMSTHRHGLGVAMLEGPMY
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
75.4
0.57
1
79.2
33
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
56.7
0.29
1.7
70.29
40.7

Associated Gene:

Gene:
KLHL4
Ensembl Gene ID:
ENSAPLG00000005695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005915
3207594 - 3246663
39070