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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3242176_3244601_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3242176 - 3244601
Intron Length:
2426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTCAA
5'SS Class:
major
3'SS Sequence:
ATAATTGTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATTTTTCATTT
Flanking Amino Acid:
STVGVAALNSKLYAVGGRDG
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
69.6
36.5
Major BPS
100
1.24
0.5
100
0
Major PPT
67.5
0.39
1
58.2
46.5
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
48.9
-0
1.7
67.08
38.2

Associated Gene:

Gene:
KLHL4
Ensembl Gene ID:
ENSAPLG00000005695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005915
3207594 - 3246663
39070