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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_324919_327136_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
324919 - 327136
Intron Length:
2218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
CTGAATTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTTCTGAATT
Flanking Amino Acid:
MFSNQSIAHSLKASTFLQSG
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
73.8
37.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
67.4
0.39
1
61.7
43
Minor 5ss
68
0.61
2.2
85.2
31.6
Minor BPS
71.4
0.75
1.4
84.15
37

Associated Gene:

Gene:
HEPH
Ensembl Gene ID:
ENSAPLG00000005347
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045856
324698 - 345391
20694
ENSAPLT00000005585
323350 - 345391
22042