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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3370836_3392610_R

Intron Information:

Intron Rank:
130857
Intron Class:
major
Intron Phase:
Intron Coordinates:
3370836 - 3392610
Intron Length:
21775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTGC
5'SS Class:
major
3'SS Sequence:
TGTATTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TGTATTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
67.7
38.4
Major BPS
72.8
0.57
1
81
30.3
Major PPT
81.3
0.7
0.9
75.9
37.9
Minor 5ss
46.7
-0.3
2.5
62.1
42.5
Minor BPS
54.5
0.14
1.8
68.05
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017640
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047572
3370376 - 3392703
22328