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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3398406_3426742_R

Intron Information:

Intron Rank:
130856
Intron Class:
major
Intron Phase:
Intron Coordinates:
3398406 - 3426742
Intron Length:
28337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.7
32.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
96.1
1.04
0.5
91.7
19.5
Minor 5ss
35.2
-1.7
3.5
49.1
47.1
Minor BPS
77.1
0.85
1.5
87.01
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017640
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046036
3370376 - 3426784
56409