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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_340500_341973_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
340500 - 341973
Intron Length:
1474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
ATTCACTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
GTGTTATTCACT
Flanking Amino Acid:
ERFVESNKMHAINGRLYANL
Intron Amino Acid Position:
981

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
72.7
39.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
67.7
0.4
1
61.3
39.2
Minor 5ss
43.2
-0.7
3.4
65.4
45.8
Minor BPS
51.3
0.12
2
73.33
43.4

Associated Gene:

Gene:
HEPH
Ensembl Gene ID:
ENSAPLG00000005347
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045856
324698 - 345391
20694
ENSAPLT00000005585
323350 - 345391
22042