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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_343825_345146_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
343825 - 345146
Intron Length:
1322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTAT
5'SS Class:
major
3'SS Sequence:
TTATTTCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTTGTTATTT
Flanking Amino Acid:
PVLQVLNYDEVTPPENVDES
Intron Amino Acid Position:
1093

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.7
35.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86
0.81
0.7
85
29.5
Minor 5ss
43.8
-0.7
3.3
63.6
48.1
Minor BPS
50.7
0.1
2.2
75.8
41.6

Associated Gene:

Gene:
HEPH
Ensembl Gene ID:
ENSAPLG00000005347
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045856
324698 - 345391
20694
ENSAPLT00000005585
323350 - 345391
22042