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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3443041_3445336_R

Intron Information:

Intron Rank:
131609
Intron Class:
major
Intron Phase:
Intron Coordinates:
3443041 - 3445336
Intron Length:
2296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTTATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATCTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
100
1.24
0.5
100
0
Major PPT
78.5
0.64
0.9
77.9
35
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
61.6
0.36
1.6
71.4
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018015
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021736
3442920 - 3595912
152993