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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3446631_3455622_R

Intron Information:

Intron Rank:
131611
Intron Class:
major
Intron Phase:
Intron Coordinates:
3446631 - 3455622
Intron Length:
8992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATCCAA
5'SS Class:
major
3'SS Sequence:
ATATTCCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTTCATAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
67
40.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.4
0.5
0.9
63.3
38.6
Minor 5ss
37.2
-1.4
3
47.6
47.8
Minor BPS
57.2
0.22
1.9
71.45
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018015
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033946
3445245 - 3656384
211140
ENSAPLT00000021736
3442920 - 3595912
152993