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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_353438_358703_R

Intron Information:

Intron Rank:
151688
Intron Class:
major
Intron Phase:
Intron Coordinates:
353438 - 358703
Intron Length:
5266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
GTTTCTCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AGTTTCTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
67.1
0.38
1
63.6
37.3
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
61
0.42
1.6
76.88
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029162
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017512
352396 - 359027
6632