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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3594356_3594971_R

Intron Information:

Intron Rank:
131606
Intron Class:
major
Intron Phase:
Intron Coordinates:
3594356 - 3594971
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGAAAT
5'SS Class:
major
3'SS Sequence:
CTTTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCACTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
73.4
37.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.5
0.84
0.7
85
28.5
Minor 5ss
36.6
-1.5
2.9
49
46.8
Minor BPS
57.9
0.33
1.8
75.87
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018015
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019490
3591948 - 3595912
3965