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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3595039_3595247_R

Intron Information:

Intron Rank:
131604
Intron Class:
major
Intron Phase:
Intron Coordinates:
3595039 - 3595247
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAG
U12 Branch Point Sequence:
TGTTTTGCCAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
52.8
0.07
1.7
63.6
42.5
Major PPT
89.2
0.88
0.6
84.3
23.5
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
37.2
-0.9
2.5
59.54
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018015
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021736
3442920 - 3595912
152993
ENSAPLT00000019490
3591948 - 3595912
3965
ENSAPLT00000017917
3594867 - 3651414
56548
ENSAPLT00000035600
3594867 - 3632227
37361
ENSAPLT00000033946
3445245 - 3656384
211140