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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3595658_3651236_R

Intron Information:

Intron Rank:
131605
Intron Class:
major
Intron Phase:
Intron Coordinates:
3595658 - 3651236
Intron Length:
55579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GCTTCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
82.6
0.73
0.8
75.9
32.7
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
71.6
0.67
1.6
76.35
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018015
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017917
3594867 - 3651414
56548