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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_36437_40582_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36437 - 40582
Intron Length:
4146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
GTTTCTAAGACT
Flanking Amino Acid:
IVIDGSNVAMSHGNKEGFSC
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
72.2
39.5
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
89.9
0.9
0.7
88.2
28.6
Minor 5ss
31.9
-2.1
3.2
43.3
44.4
Minor BPS
51.7
0.13
2
76.75
39.9

Associated Gene:

Gene:
ZC3H12B
Ensembl Gene ID:
ENSAPLG00000003874
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003967
20417 - 43859
23443