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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_376401_376874_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
376401 - 376874
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
CTCGGATCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GGTTCTTTATCT
Flanking Amino Acid:
IYQTLTRFYIGNRTIRMVCL
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.5
40.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
70.7
0.47
0.9
65.8
40
Minor 5ss
37.5
-1.4
3.3
49.3
46.4
Minor BPS
68.5
0.66
1.6
81.53
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006248
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006473
371516 - 377499
5984