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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3812793_3825040_R

Intron Information:

Intron Rank:
132339
Intron Class:
major
Intron Phase:
Intron Coordinates:
3812793 - 3825040
Intron Length:
12248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTACATTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.5
0.53
0.9
74.7
36
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
59.7
0.39
1.7
77
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018450
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028760
3812648 - 3826005
13358