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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3830407_3833066_R

Intron Information:

Intron Rank:
140632
Intron Class:
major
Intron Phase:
Intron Coordinates:
3830407 - 3833066
Intron Length:
2660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATTGGGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72
0.5
0.9
66.2
40.8
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
44.8
-0.4
2.8
68.06
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023015
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024411
3829474 - 3846303
16830
ENSAPLT00000040903
3830379 - 3878356
47978
ENSAPLT00000026090
3829474 - 3848235
18762