About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3833176_3845989_R

Intron Information:

Intron Rank:
140633
Intron Class:
major
Intron Phase:
Intron Coordinates:
3833176 - 3845989
Intron Length:
12814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TAATTTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.2
0.63
0.9
70.6
40.6
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023015
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024411
3829474 - 3846303
16830