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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3833176_3878273_R

Intron Information:

Intron Rank:
140637
Intron Class:
major
Intron Phase:
Intron Coordinates:
3833176 - 3878273
Intron Length:
45098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TAATTTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.2
0.63
0.9
70.6
40.6
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023015
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040903
3830379 - 3878356
47978