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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3884290_3950449_R

Intron Information:

Intron Rank:
130939
Intron Class:
major
Intron Phase:
Intron Coordinates:
3884290 - 3950449
Intron Length:
66160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TGAGCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
81.4
0.71
0.7
77.3
24.8
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
54
0.2
1.7
69.05
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017669
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037415
3882497 - 3950528
68032