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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3886904_4055931_R

Intron Information:

Intron Rank:
137935
Intron Class:
major
Intron Phase:
Intron Coordinates:
3886904 - 4055931
Intron Length:
169028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCGGTTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
72.7
0.51
0.9
68.7
31.7
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
44.5
-0.4
2.2
56.67
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021719
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048117
3886779 - 4061143
174365
ENSAPLT00000037154
3886779 - 4067933
181155