Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_390178_393500_R

Intron Information:

Intron Rank:

147159

Intron Class:

major

Intron Phase:

Intron Coordinates:

390178 - 393500

Intron Length:

3323

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGACATCC

5'SS Class:

major

3'SS Sequence:

TGTTATTTCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TGTTATTTCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.1

65.6

35.1

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

81.6

0.71

0.9

37.6

Minor 5ss

39.3

-1.2

51.6

45.1

Minor BPS

57.4

0.23

1.9

72.93

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026481

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045532

389945 - 393541

3597