Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_3931861_3933388_F

Intron Information:

Intron Rank:

141332

Intron Class:

major

Intron Phase:

Intron Coordinates:

3931861 - 3933388

Intron Length:

1528

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TTATGGCTTGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

CATCCAGGAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.1

1.06

0.7

83.2

30.8

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

72.6

0.51

0.9

66.4

40.5

Minor 5ss

33.5

-1.9

2.9

40.7

45.5

Minor BPS

42.7

-0.5

2.2

55.46

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026103

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042240

3931259 - 3933492

2234

ENSAPLT00000032080

3931098 - 3933492

2395