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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4037393_4043162_R

Intron Information:

Intron Rank:
145669
Intron Class:
major
Intron Phase:
Intron Coordinates:
4037393 - 4043162
Intron Length:
5770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGG
5'SS Class:
major
3'SS Sequence:
TCTCCACTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTTCTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
54.8
44.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
75.5
0.57
0.8
68.8
30.5
Minor 5ss
34.4
-1.8
3.5
46.9
48.5
Minor BPS
64
0.52
2
87.74
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025766
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039271
4007591 - 4043307
35717
ENSAPLT00000025790
4008849 - 4043307
34459