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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4056252_4056962_R

Intron Information:

Intron Rank:
137933
Intron Class:
major
Intron Phase:
Intron Coordinates:
4056252 - 4056962
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TATCTGCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TTTATCTGCACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
70.1
35.6
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
68.4
0.41
1
62.5
38.5
Minor 5ss
33.5
-1.9
2.7
44.7
42.7
Minor BPS
49.6
-0.1
2
64.63
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021719
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037154
3886779 - 4067933
181155
ENSAPLT00000030200
4055932 - 4067933
12002
ENSAPLT00000048117
3886779 - 4061143
174365