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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4057042_4060983_R

Intron Information:

Intron Rank:
137940
Intron Class:
major
Intron Phase:
Intron Coordinates:
4057042 - 4060983
Intron Length:
3942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTCTG
5'SS Class:
major
3'SS Sequence:
TTCTTACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTATTCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
65.7
45.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
87.6
0.85
0.7
85.4
28
Minor 5ss
36.8
-1.5
3.2
50.2
46
Minor BPS
69.6
0.69
1.5
84.08
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021719
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048117
3886779 - 4061143
174365