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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4057042_4067745_R

Intron Information:

Intron Rank:
137934
Intron Class:
major
Intron Phase:
Intron Coordinates:
4057042 - 4067745
Intron Length:
10704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTATTCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
77.1
37.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
87.6
0.85
0.7
85.4
28
Minor 5ss
44
-0.6
2.5
52.7
44
Minor BPS
69.6
0.69
1.5
84.08
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021719
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037154
3886779 - 4067933
181155
ENSAPLT00000030200
4055932 - 4067933
12002