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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_40723_41463_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40723 - 41463
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
AGCTTCTTGACT
Flanking Amino Acid:
EQSRPDAPITDQEILRKLEK
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
74.9
34.9
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
82.8
0.74
0.8
76.3
36.9
Minor 5ss
31
-2.2
3.6
46.5
48.8
Minor BPS
70.5
0.73
1.2
77.63
38.8

Associated Gene:

Gene:
ZC3H12B
Ensembl Gene ID:
ENSAPLG00000003874
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003967
20417 - 43859
23443