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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_41699_41789_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
41699 - 41789
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TATTTTGCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTTATT
Flanking Amino Acid:
RLLMYSFVNDKFMPPDDPLG
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
83.3
29.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.6
0.58
1
75
39.5
Minor 5ss
63.8
0.47
2.2
75.6
33.8
Minor BPS
62.9
0.49
1.9
83.69
36.7

Associated Gene:

Gene:
ZC3H12B
Ensembl Gene ID:
ENSAPLG00000003874
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003967
20417 - 43859
23443