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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_418088_418854_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
418088 - 418854
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATTTCCTTACTG
Flanking Amino Acid:
ITLLNTPFTLVRFVNSTWIF
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
72.3
37.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
80.6
0.69
0.8
78
30.8
Minor 5ss
33.2
-1.9
3.2
40.6
40.8
Minor BPS
69.8
0.48
1.7
73.58
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006354
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006579
417215 - 424585
7371