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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_41897_42438_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41897 - 42438
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTATTTATCT
Flanking Amino Acid:
PEHKKQPCPYGKKCTYGHKC
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.3
0.82
0.7
80.4
31
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
62.5
0.47
1.8
81.72
39.6

Associated Gene:

Gene:
ZC3H12B
Ensembl Gene ID:
ENSAPLG00000003874
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003967
20417 - 43859
23443