About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_420212_423976_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
420212 - 423976
Intron Length:
3765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAC
U12 Branch Point Sequence:
ATATACGTATTT
Flanking Amino Acid:
IYQKLFQYNYREATVRSLCV
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
61.6
0.29
1
59
37.6
Major PPT
76.6
0.6
1
74.9
39
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
45.7
-0.2
2.3
68.18
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006354
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006579
417215 - 424585
7371