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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_43253_43571_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43253 - 43571
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
AACTCTATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AGTTCCGTAACT
Flanking Amino Acid:
HEVVTQWIRVASW*
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
69.8
0.49
1
61
37.5
Major PPT
63.1
0.29
1.1
65.3
39.3
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
69.8
0.7
2
87.41
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003903
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046376
43241 - 79050
35810