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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4333763_4333877_R

Intron Information:

Intron Rank:
150461
Intron Class:
major
Intron Phase:
Intron Coordinates:
4333763 - 4333877
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCTCCC
5'SS Class:
major
3'SS Sequence:
ACTTCCAAACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
60.8
44.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
61.4
0.26
1
53.4
40
Minor 5ss
40
-1.1
3
54.6
42.5
Minor BPS
51.7
0.05
1.8
68.7
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028442
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040478
4332771 - 4334941
2171