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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_4334567_4340564_R

Intron Information:

Intron Rank:
150465
Intron Class:
major
Intron Phase:
Intron Coordinates:
4334567 - 4340564
Intron Length:
5998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
CATGCCCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GTTTCCTGATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
70.8
0.47
0.9
62.6
34.2
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
60.7
0.32
1.7
72.25
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028442
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048227
4252050 - 4340639
88590